豆佳宜

1. Jiayi Dou*; Anastassia A.Vorobieva*; William Sheffler; Lindsey A.Doyle; Hahnbeom Park; Matt hew J.Bick; Binchen Mao; Glenna W.Foight; Min Yen Lee; Lauren A.Gagnon; Lauren Carter; Banumathi Sankaran; Sergey Ovchinnikov; Enrique Marcos; Po-Ssu Huang; Joshua C.Vaughan; Barry L.Stoddard; David Baker^#.De novo design of a fluorescence-activating β-barrel.Nature. 12 Sep, 2018.

2. Jiayi Dou*; Lindsey Doyle; Per Jr.Greisen; Alberto Schena; Hahnbeom Park; Kai Johnsson; Ba rry L.Stoddard; David Baker^#.Sampling and energy evaluation challenges in ligand binding protein design.Protein Science. 04 Oct 2017.

3. Jiayi Dou*; Inna Goreshnik; Cassie Bryan; David Baker; Eva-Maria Strauch^#.Parallelized Id entification of On- and Off-Target Protein Interactions.Molecular Systems Design & Engineering. 26 Nov 2019.

4. Xu, Chunfu*; Lu, Peilong^#*; Gamal El-Din, Tamer M; Pei, Xue Y; Johnson, Matthew C; Uyeda, At suko; Bick, Matthew J; Xu, Qi; Jiang, Daohua; Bai, Hua; Reggiano, Gabriella; Hsia, Yang; Brunette , T J; Dou, Jiayi; Ma, Dan; Lynch, Eric M; Boyken, Scott E; Huang, Po-Ssu; Stewart, Lance; DiMaio , Frank; Kollman, Justin M; Luisi, Ben F; Matsuura, Tomoaki; Catterall, William A^#; Baker, David^#.Computational design of transmembrane pores.Nature. 26 Aug 2020.

5. Klima, Jason C*.; Doyle, Lindsey A.; Lee, Justin Daho; Rappleye, Michael; Gagnon, Lauren A .; Lee, Min Yen; Barros, Emilia P.; Vorobieva, Anastassia A.; Dou, Jiayi; Bremner, Samantha; Quon , Jacob S.; Chow, Cameron M.; Carter, Lauren; Mack, David L.; Amaro, Rommie E.; Vaughan, Joshua C .; Berndt, Andre; Stoddard, Barry L.; Baker, David^#.Incorporation of sensing modalities into de novo designed fluorescence-activating proteins.Nature Communications. 08 Feb 2021.

6. Christine E.Tinberg*; Sagar D.Khare*; Jiayi Dou; Lindsey Doyle; Jorgen W.Nelson; Alberto Sc hena; Wojciech Jankowski; Charalampos G.Kalodimos; Kai Johnsson; Barry L.Stoddard; David Baker^#.Computational design of ligand-binding proteins with high affinity and selectivity.Nature. 04 Sep 2013.

A recipe for ligand-binding proteins

7. Enrique Marcos*; Benjamin Basanta*; Tamuka M.Chidyausiku; Yuefeng Tang; Gustav Oberdorfer; Gaohua Liu; G.V.T.Swapna; Rongjin Guan; Daniel-Adriano Silva; Jiayi Dou; Jose Henrique Pereira; R ong Xiao; Banumathi Sankaran; Peter H.Zwart; Gaetano T.Montelione; David Baker^#.Principles for d esigning proteins with cavities formed by curved β sheets.Science. 13 Jan 2017.

8. Emilia P.Barros*; Jamie M.Schiffer; Anastassia Vorobieva; Jiayi Dou; David Baker; Rommie E .Amaro^#.Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics.Journal of Chemical Theory and Computation. 13 Aug 2019.

9. Richard D.Smith;* Kelly L.Damm-Ganamet; James B.Dunbar; Aqeel Ahmed; Krishnapriya Chinnasw amy; James E.Delproposto; Ginger M.Kubish; Christine E.Tinberg; Sagar D.Khare; Jiayi Dou; Lindsey Doyle; Jeanne A.Stuckey; David Baker; Heather A.Carlson^#.CSAR Benchmark Exercise 2013: Evaluatio n of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge.Journal of Chemical Information and Modeling. 29 Sep 2015.