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Principal investigator

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DongruiAssistant Professor , PhD, Assistant Professor

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Representative Publications (*First Author, # Corresponding Author)

1. Xing Yu-Hang*; Dong Rui*; Lee Lukuo; Rengarajan Shruthi; Riggi Nicolò; Boulay Gaylor; Rivera N. Miguel^#; .DisP-seq reveals the genome-wide functional organization of DNA-associated disordered proteins.NATURE BIOTECHNOLOGY. Apr 2023.
2. Sanalkumar Rajendran*; Dong Rui*; Lee Lukuo; Xing Yu-Hang; Iyer Sowmya; Letovanec Igor; La Rosa Stefano; Finzi Giovanna; Musolino Elettra; Papait Roberto; Chebib Ivan; Nielsen G. Petur; Renella Raffaele; M. Cote Gregory; Choy Edwin; Aryee Martin; Stegmaier Kimberly; Stamenkovic Ivan; Rivera N. Miguel^#; Riggi Nicolò^#; .Highly connected 3D chromatin networks established by an oncogenic fusion protein shape tumor cell identity.SCIENCE ADVANCES. Mar 2023.
3. Dong Rui*; Yuan Guo-Cheng^#; .SpatialDWLS: accurate deconvolution of spatial transcriptomic data.GENOME BIOLOGY. 2021.
4. Dong Rui*; Yuan Guo-Cheng^#; .GiniClust3: a fast and memory-efficient tool for rare cell type identification.BMC BIOINFORMATICS. 2020.
5. Möller Emely*; Praz Viviane; Rajendran Sanalkumar; Dong Rui; Cauderay Alexandra; Xing Yu-Hang; Lee Lukuo; Fusco Carlo; Broye C. Liliane; Cironi Luisa; Iyer Sowmya; Rengarajan Shruthi; Awad E. Mary; Naigles Beverly; Letovanec Igor; Ormas Nicola; Finzi Giovanna; La Rosa Stefano; Sessa Fausto; Chebib Ivan; Nielsen G. Petur; Digklia Antonia; Spentzos Dimitrios; Cote M. Gregory; Choy Edwin; Aryee Martin; Stamenkovic Ivan; Boulay Gaylor; Rivera N. Miguel; Riggi Nicolò^#; .EWSR1-ATF1 dependent 3D connectivity regulates oncogenic and differentiation programs in Clear Cell Sarcoma.NATURE COMMUNICATIONS. Apr 2022.
6. Yasuhara Takaaki*; Xing Yu-Hang; Bauer C Nicholas; Lee Lukuo; Dong Rui; Yadav Tribhuwan; Soberman J Roy; Rivera N Miguel; Zou Lee^#; .Condensates induced by transcription inhibition localize active chromatin to nucleoli.MOLECULAR CELL. Aug 2022.
7. Dries Ruben^#*; Zhu Qian; Dong Rui; Eng Chee-Huat Linus; Li Hupeng; Liu Kan*; Fu Yuntian; Zhao Tianxiao; Sarkar Arpan; Bao Feng; George E. Rani; Pierson Nico; Cai Long; Yuan Guo-Cheng^#; .Giotto: a toolbox for integrative analysis and visualization of spatial expression data.GENOME BIOLOGY. Mar 2021.
8. Akerberg N. Brynn*; Gu Fei; VanDusen J. Nathan; Zhang Xiaoran; Dong Rui; Li Kai*; Zhang Bing; Zhou Bin; Sethi Isha; Ma Qing; Wasson Lauren; Wen Tong; Liu Jinhua; Dong Kunzhe; Conlon L. Frank; Zhou Jiliang; Yuan Guo-Cheng; Zhou Pingzhu; Pu T. William^#; .A reference map of murine cardiac transcription factor chromatin occupancy identifies dynamic and conserved enhancers.NATURE COMMUNICATIONS. Oct 2019.
9. Tsoucas Daphne^#*; Dong Rui; Chen Haide; Zhu Qian; Guo Guoji; Yuan Guo-Cheng^#; .Accurate estimation of cell-type composition from gene expression data.NATURE COMMUNICATIONS. Jul 2019.

Dongrui, PhDAssistant Professor

Principal investigator

Group Introduction

Research Achievement

Representative Publications (*First Author, # Corresponding Author)

Monograph

Patent

Funding

Awards

Research Achievement

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