Principal investigator
Name:
Hanhui MaAssociate Professor , PhD, Associate Professor
Position:
Affiliation:
School of Life Science and Technology
Honor:
Group Introduction
Research Area:
Genome Editing, Epigenetics and Immunotherapy
Research Interests:
My long-term goal is to discover disease-related epigenetic alterations (EpiRead), and their mechanisms of action, and utilize the discoveries for either prevention or epigenetic therapy of the disease (EpiMod). There are three major types of epigenetic modifications for the control of gene activity: DNA methylation (5mC), histone modifications (H3K27ac, H3K9me3, H3K27me3), and RNA-associated epigenetic modifications (m6A, microRNAs, LncRNAs). In the next five years, I will focus on 1) the identification of cancer, neurological disorders, or aging-specific epigenetic alterations; 2) the development of an epigenome editing toolbox to recover or rescue disease-related epigenetic alterations; 3) evaluating the therapeutic potential of aberrant epigenetic alterations in the animal model and preclinical studies by the AAV or LNP delivery systems. One of my lab's new directions is immunogene therapy. We are currently focusing on the development of nucleic acid drugs for the treatment of solid tumors and their preclinical research. This includes: 1) Developing tumor-specific targeted AAV (TsAAV) and LNP (TsLNP) to achieve intratumoral-specific expression of tumor immunomodulatory factors such as Bispecific T-cell Engager (BiTE), cytokines, chemokine etc; 2) Overcoming the blood-tumor barrier (BTB) and remodeling the tumor immune microenvironment (TME); 3) Achieving highly efficient activation of tumor-infiltrating T cells (TILs) within tumors to specifically kill cancer cells; 4) Conducting safety and efficacy evaluations in disease animal models with clinical application value, such as liver cancer and lung cancer, among others.
Representative Publications (*First Author, # Corresponding Author)
- 1. 孙阳阳*; 马涵慧.表观基因组编辑的研究进展与应用.中国科学:生命科学. 12 Jun 2025. 55(06):1193-1209.
- 2. He, Xiaohui*; Sun, Yadong; Ma, Hanhui.ParSite is a multicolor DNA labeling system that allows for simultaneous imaging of triple genomic loci in living cells.PLOS BIOLOGY. Jan 2025. 23(1).
- 3. Liu SY(刘思远)*; Zhao YD(赵英迪)*; Mo QQ(莫淇钦); Sun YD(孙亚东); Ma HH(马涵慧).Engineering CjCas9 for Efficient Base Editing and Prime Editing.CRISPR JOURNAL. 01 Dec 2024. 7(6):395-405.
- 4. Han, Linxiao*; Hu, Yueer*; Mo, Qiqin*; Yang, Hao; Gu, Feng; Bai, Fang; Sun, Yadong; Ma, Hanhui.Engineering Miniature IscB Nickase for Robust Base Editing with Broad Targeting Range.NATURE CHEMICAL BIOLOGY. Dec 2024. 20(12):1629-1639.
- 5. Hu, Yueer*; Han, Linxiao*; Mo, Qiqin; Du, Zengming; Jiang, Wei; Wu, Xia; Zheng, Jing; Xiao, Xiao; Sun, Yadong; Ma, Hanhui.Engineering Miniature CRISPR-Cas Un1Cas12f1 for Efficient Base Editing.MOLECULAR THERAPY: NUCLEIC ACIDS. 11 Jun 2024. 35(2).
- 6. He XH(何晓慧)*; Tan YX(谭宇希); Feng Y(冯颖); Sun YD(孙亚东); Ma HH(马涵慧).Tracking pairwise genomic loci by the ParB–ParS and Noc-NBS systems in living cells.NUCLEIC ACIDS RESEARCH. 22 May 2024. 52(9):4922-4934.
- 7. Wang XN(王向南)*; Li LY(李凌云)*; Guo L(郭力); Feng Y(冯颖); Du ZM(杜增民); Jiang W(蒋威); Wu X(吴侠); Zheng J(郑静); Xiao X(肖啸); Zheng H(郑辉); Sun YD(孙亚东); Ma HH(马涵慧).Robust miniature Cas-based transcriptional modulation by engineering Un1Cas12f1 and tethering Sso7d.MOLECULAR THERAPY. 03 Apr 2024. 32(4):910-919.
- 8. Ying Feng*; Li Guo; Chen Yang; Hui Zheng; Xiao Xiao; Hanhui Ma.The local density of H3K9me3 dictates the stability of HP1α condensates-mediated genomic interactions.JOURNAL OF GENETICS AND GENOMICS. 26 Apr 2023. 50(10):776-785.
- 9. Feng Y(冯颖)*; Liu SY(刘思远)*; Mo QQ(莫淇钦); Xiao X(肖啸); Liu PP(刘朋朋); Ma HH(马涵慧).Enhancing Prime Editing Efficiency and Flexibility with Tethered and Split pegRNAs.PROTEIN & CELL. 15 Jul 2022. 14(4):304-308.
- 10. Feng, Ying*; Wang, Yao; Wang, Xiangnan; He, Xiaohui; Yang, Chen; Naseri, Ardalan; Pederson, Thoru; Zheng, Jing; Zhang, Shaojie; Xiao, Xiao; Xie, Wei; Ma, Hanhui.Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription.GENOME BIOLOGY. 08 Dec 2020. 21(1).
- 11. 马涵慧*; 冯颖; 郑静.实现高度可控向三维推进——谈基于CRISPR/Cas基因调控系统突破进展.前沿科学. 2019. 3:24-27.
- 12. Guo, Lijuan*; Zhao, Yilin*; Zhang, Qian; Feng, Ying; Bi, Lulu; Zhang, Xia; Wang, Teng; Liu, Cong; Ma, Hanhui; Sun, Bo.Stochastically multimerized ParB orchestrates DNA assembly as unveiled by single-molecule analysis.NUCLEIC ACIDS RESEARCH. 09 Sep 2022. 50(16):9294-9305.
- 13. Ma, Hanhui*; Tu, Li-Chun; Chung, Yu-Chieh; Naseri, Ardalan; Grunwald, David; Zhang, Shaojie; Pederson, Thoru.Cell cycle- and genomic distance-dependent dynamics of a discrete chromosomal region.JOURNAL OF CELL BIOLOGY. May 2019. 218(5):1467-1477.
- 14. Ma, Hanhui*; Tu, Li-Chun; Chung, Yu-Chieh; Naseri, Ardalan; Grunwald, David; Zhang, Shaojie; Pederson, Thoru.A CRISPR view of the genome in living cells: Cell cycle and genomic distance dependent dynamics of chromosomal loci.Biopolymers and Cell. 2019. 35(3):181-182.
- 15. Wang, Lijie*; Xue, Wei*; Zhang, Hongxia*; Gao, Runze*; Qiu, Houyuan*; Wei, Jia; Zhou, Lina; Lei, Yun-Ni; Wu, Xiaocheng; Li, Xiao; Liu, Chengfang; Wu, Jing; Chen, Qiubing; Ma, Hanhui; Huang, Xingxu; Cai, Cheguo; Zhang, Ying; Yang, Bei; Yin, Hao; Yang, Li; Chen, Jia.Eliminating base-editor-induced genome-wide and transcriptome-wide off-target mutations.NATURE CELL BIOLOGY. May 2021. 23(5):552-563.
- 16. Li, Jianan*; Liu, Zhen*; Huang, Shisheng*; Wang, Xiao; Li, Guanglei; Xu, Yuting; Yu, Wenxia; Chen, Shanshan; Zhang, Yu; Ma, Hanhui; Ke, Zunfu; Chen, Jia; Sun, Qiang; Huang, Xingxu.Efficient base editing in G/C-rich regions to model androgen insensitivity syndrome.CELL RESEARCH. Feb 2019. 29(2):174-176.
- 17. Ma, Hanhui*; Tu, Li-Chun; Naseri, Ardalan; Chung, Yu-Chieh; Grunwald, David; Zhang, Shaojie; Pederson, Thoru.CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging.NATURE METHODS. Nov 2018. 15(11):928-+.
- 18. Ma, Hanhui*; Reyes-Gutierrez, Pablo; Pederson, Thoru.A CRISPR-Based Selective Gene Inhibition Method Reveals Dynamic Features of a Cell Nucleus Nanobody Related to the Disease Myotonic Dystrophy.SMALL METHODS. 2018. 2(9).
- 19. Chuai, Guohui*; Ma, Hanhui; Yan, Jifang; Chen, Ming; Hong, Nanfang; Xue, Dongyu; Zhou, Chi; Zhu, Chenyu; Chen, Ke; Duan, Bin; Gu, Feng; Qu, Sheng; Huang, Deshuang; Wei, Jia; Liu, Qi.DeepCRISPR: optimized CRISPR guide RNA design by deep learning.GENOME BIOLOGY. 26 Jun 2018. 19(1).
- 20. Ma, Hanhui*; Tu, Li-Chun; Naseri, Ardalan; Huisman, Maximiliaan; Zhang, Shaojie; Grunwald, David; Pederson, Thoru.Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow.NATURE BIOTECHNOLOGY. 2016. 34(5):528-530.
- 21. Ma, Hanhui*; Tu, Li-Chun; Naseri, Ardalan; Huisman, Maximiliaan; Zhang, Shaojie; Grunwald, David; Pederson, Thoru.CRISPR-Cas9 nuclear dynamics and target recognition in living cells.JOURNAL OF CELL BIOLOGY. 2016. 214(5):529-537.
- 22. Ma, Hanhui*; Naseri, Ardalan; Reyes-Gutierrez, Pablo; Wolfe, Scot A.; Zhang, Shaojie; Pederson, Thoru.Multicolor CRISPR labeling of chromosomal loci in human cells.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2015. 112(10):3002-3007.
- 23. Ma, Hanhui*; Reyes-Gutierrez, Pablo; Pederson, Thoru.Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2013. 110(52):21048-21053.
- 24. Ma, Hanhui*; Pederson, Thoru.The nucleolus stress response is coupled to an ATR-Chk1-mediated G2 arrest.MOLECULAR BIOLOGY OF THE CELL. 2013. 24(9):1334-1342.
- 25. Ma, Hanhui*; McLean, Janel R.; Chao, Lucy Fang-I; Mana-Capelli, Sebastian; Paramasivam, Murugan; Hagstrom, Kirsten A.; Gould, Kathleen L.; McCollum, Dannel.A Highly Efficient Multifunctional Tandem Affinity Purification Approach Applicable to Diverse Organisms.MOLECULAR & CELLULAR PROTEOMICS. 2012. 11(8):501-511.
- 26. Ma, Hanhui*; Pederson, Thoru.Nucleophosmin is a binding partner of nucleostemin in human osteosarcoma cells.MOLECULAR BIOLOGY OF THE CELL. 2008. 19(7):2870-2875.
- 27. Ma, Hanhui*; Pederson, Thoru.Nucleostemin: a multiplex regulator of cell-cycle progression.TRENDS IN CELL BIOLOGY. 2008. 18(12):575-579.
- 28. Ma, Hanhui*; Pederson, Thoru.Depletion of the nucleolar protein nucleostemin causes g1 cell cycle arrest via the p53 pathway.MOLECULAR BIOLOGY OF THE CELL. 2007. 18(7):2630-2635.
- 29. Ma, HH*; Yang, L; Yang, XY; Xu, ZP; Li, BL.Bacterial expression, purification, and in vitro N-myristoylation of fusion hepatitis B virus preS1 with the native-type N-terminus.PROTEIN EXPRESSION AND PURIFICATION. 2003. 27(1):49-54.
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