Principal investigator
Name:
Wenqing ShuiAssociate Professor , PhD, Associate Professor
Position:
Affiliation:
School of Life Science and Technology, iHuman Institute
Honor:
Education Background:
- 1998/9-2001/6, Fudan University, China, B.Sc. in Chemistry
- 2001/9-2004/6, Fudan University, China, M.S. in Chemistry
- 2004/9-2009/5, UC Berkeley, USA, Ph.D. in Chemistry
Working Experience:
- 2009-2010, MS application scientist, Thermo Fisher Scientific, USA
- 2010-2013, Nankai University, China, Principle Investigator, Associate Professor
- 2013-2016, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Principle Investigator
- 2016-2020, SLST & iHuman Institute, ShanghaiTech University, China, Assistant Professor (Tenure-track)
- 2020-Now, SLST & iHuman Institute, ShanghaiTech University, China, Associate Professor (Tenured)
Group Introduction
Research Area:
Functional Proteomics and Chemical Biology
Research Interests:
The superfamily of G-protein-coupled receptors (GPCRs) play essential roles in diverse pathophysiological conditions and represent a most attractive family of therapeutic targets on which about 35% of marketed drugs act. Innumerable efforts have been made to discover novel ligands that can modulate the activity of specific GPCR targets or identify new potential drug targets from the GPCR superfamily for the treatment of various diseases. However, limitations of conventional techniques for GPCR ligand screening and functional proteomics highlight the need for more sensitive, selective and robust technologies that can accelerate GPCR drug discovery and functional elucidation. The central theme of Shui group research is GPCR Proteomics and Ligand Discovery. My group is dedicated to developing versatile mass spectrometry (MS)-based approaches to be integrated with biochemical, structural, pharmacological and computational approaches for GPCR research in three specific directions: I. GPCR ligand screen and drug discovery. We develop affinity MS techniques for high-throughput GPCR ligand screen, which generates ligands with new scaffolds and new activities to serve as chemical tools/probes for elucidating GPCR signaling mechanism or as potential leads for drug development. II.Functional proteomics targeting GPCR proteins in the brain. Through profiling the transmembrane proteome, especially the GPCR family, in the brain with advanced proteomics technology, we aim to expand the understanding of membrane receptor organization and dynamics as well as accelerate the discovery of therapeutic targets for neurological disease treatment. III. Structural proteomics to probe GPCR conformational dynamics. By developing structural MS approaches, we aim to map the conformational ensemble of GPCRs and their signaling complexes in solution or in cells, which could provide new insights into GPCR activation mechanisms and opportunities for the design of ligands targeting non-canonical GPCR states.
Representative Publications (*First Author, # Corresponding Author)
- 1. Dang, Ting*; Yu, Jie*; Cao, Zhihe*; Zhang, Bingjie; Li, Shanshan; Xin, Ye; Yang, Lingyun; Lou, Ronghui; Zhuang, Min#; Shui. Wenqing#.Endogenous cell membrane interactome mapping for the GLP-1 receptor in different cell types.NATURE CHEMICAL BIOLOGY. 2024.
- 2. Liu, Hongyue*; Yan, Pengfei*; Zhang, Zhaoyu; Han, Hongbo; Zhou, Qingtong; Zheng, Jie; Zhang, Jian; Xu, Fei#; Shui, Wenqing#.Structural mass spectrometry captures residue-resolved comprehensive conformational rearrangements of a G protein-coupled receptor.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2024. 146(29):20045-20058. .
- 3. Li S*; Luo H*; Tang P; Tian C; Hu J#; Lu H#; Shui W#. Generation of a deep mouse brain spectral library for transmembrane proteome profiling in mental disease models.MOLECULAR & CELLUAR PROTEOMICS. 2024. 23(6), 10077.
- 4. Lou R*; Shui W#.Acquisition and analysis of DIA-based proteomic data: a comprehensive survey in 2023.MOLECULAR & CELLUAR PROTEOMICS. 2024. 23(2), 100712.
- 5. Xin, Ye*; Liu, Shuo; Liu, Yan; Qian, Zhen; Liu, Hongyue; Zhang, Bingjie; Guo, Taijie; Thompson, Garth J.; Stevens, Raymond C.; Sharpless, K. Barry#; Dong, Jiajia#; Shui, Wenqing#; .Affinity selection of double-click triazole libraries for rapid discovery of allosteric modulators for GLP-1 receptor.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023. 120(11):e2220767120.
- 6. Yuan, Shijia*; Xia, Lisha; Wang, Chenxi; Wu, Fan; Zhang, Bingjie; Pan, Chen; Fan, Zhiran; Lei, Xiaoguang; Stevens, C. Raymond ; Sali, Andrej; Sun, Liping#; Shui, Wenqing#.Conformational dynamics of the activated GLP-1 receptor-Gs complex revealed by cross-linking mass spectrometry and integrative structure modeling.ACS CENTRAL SCIENCE. 2023. 9, 5:992–1007.
- 7. Lou, Ronghui*; Cao, Ye; Li, Shanshan; Lang, Xiaoyu; Li, Yunxia; Zhang, Yaoyang#; Shui, Wenqing#; .Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics.NATURE COMMUNICATIONS. 2023. 14(1):94.
- 8. Qu, Xiangli*; Qiu, Na; Wang, Mu; Zhang, Bingjie; Du, Juan; Zhong, Zhiwei; Xu, Wei; Chu, Xiaojing; Ma, Limin; Yi, Cuiying; Han, Shuo; Shui, Wenqing#; Zhao, Qiang#; Wu, Beili#; .Structural basis of tethered agonism of the adhesion GPCRs ADGRD1 and ADGRF1.NATURE. 2022. 604(7907):779-785.
- 9. Lou, Ronghui*; Liu, Weizhen; Li, Rongjie; Li, Shanshan; He, Xuming#; Shui, Wenqing#; .DeepPhospho accelerates DIA phosphoproteome profiling through in silico library generation.NATURE COMMUNICATIONS. 2021. 12(1):6685.
- 10. Li, Shanshan*; Luo, Huoqing; Lou, Ronghui; Tian, Cuiping; Miao, Chen; Xia, Lisha; Pan, Chen; Duan, Xiaoxiao; Dang, Ting; Li, Hui; Fan, Chengyu; Tang, Pan; Zhang, Zhuangzhuang; Liu, Yan; Li, Yunxia; Xu, Fei; Zhang, Yaoyang; Zhong, Guisheng#; Hu, Ji#; Shui, Wenqing#; .Multiregional profiling of the brain transmembrane proteome uncovers novel regulators of depression.SCIENCE ADVANCES. 2021. 7(30):eabf0634.
- 11. Yang, Dehua*; Zhou, Qingtong; Labroska, Viktorija; Qin, Shanshan; Darbalaei, Sanaz; Wu, Yiran; Yuliantie, Elita; Xie, Linshan; Tao, Houchao; Cheng, Jianjun; Liu, Qing; Zhao, Suwen; Shui, Wenqing#; Jiang, Yi#; Wang, Ming-Wei#; .G protein-coupled receptors: structure- and function-based drug discovery.SIGNAL TRANSDUCTION AND TARGETED THERAPY. 2021. 6(1):7.
- 12. Li, Hui*; Yang, Jie; Tian, Cuiping; Diao, Min; Wang, Quan; Zhao, Simeng; Li, Shanshan; Tan, Fangzhi; Hua, Tian; Qin, Ya; Lin, Chao-Po; Deska-Gauthier, Dylan; Thompson, Garth J.; Zhang, Ying; Shui, Wenqing; Liu, Zhi-Jie; Wang, Tong; Zhong, Guisheng#; .Organized cannabinoid receptor distribution in neurons revealed by super-resolution fluorescence imaging.NATURE COMMUNICATIONS. 2020. 11(1):5699.
- 13. Li, Shanshan*; Shui, Wenqing#; .Systematic mapping of protein–metabolite interactions with mass spectrometry-based techniques.CURRENT OPINION IN BIOTECHNOLOGY. 2020. 64:24-31.
- 14. Lou, Ronghui*; Tang, Pan; Ding, Kang; Li, Shanshan; Tian, Cuiping; Li, Yunxia; Zhao, Suwen#; Zhang, Yaoyang#; Shui, Wenqing#; .Hybrid spectral library combining DIA-MS data and a targeted virtual library substantially deepens the proteome coverage.ISCIENCE. 2020. 23(3):100903.
- 15. Zhang, Bingjie*; Zhao, Simeng; Yang, Dehua; Wu, Yiran; Xin, Ye; Cao, Haijie; Huang, Xi-Ping; Cai, Xiaoqing; Sun, Wen; Ye, Na; Xu, Yueming; Peng, Yao; Zhao, Suwen; Liu, Zhi-Jie; Zhong, Guisheng#; Wang, Ming-Wei#; Shui, Wenqing#; .A novel G protein-biased and subtype-selective agonist for a G protein-coupled receptor discovered from screening herbal extracts.ACS CENTRAL SCIENCE. 2020. 6(2):213-225.
- 16. Lu, Yan*; Qin, Shanshan; Zhang, Bingjie; Dai, Antao; Cai, Xiaoqing; Ma, Mengna; Gao, Zhan-Guo; Yang, Dehua; Stevens, Raymond C.; Jacobson, Kenneth A.; Wang, Ming-Wei#; Shui, Wenqing#; .Accelerating the throughput of affinity mass spectrometry-based ligand screening toward a G protein-coupled receptor.ANALYTICAL CHEMISTRY. 2019. 91(13):8162-8169.
- 17. Qin, Shanshan*; Meng, Mengmeng; Yang, Dehua; Bai, Wenwen; Lu, Yan; Peng, Yao; Song, Gaojie; Wu, Yiran; Zhou, Qingtong; Zhao, Suwen; Huang, Xiping; McCorvy, John D.; Cai, Xiaoqing; Dai, Antao; Roth, Bryan L.; Hanson, Michael A.; Liu, Zhi-Jie; Wang, Ming-Wei#; Stevens, Raymond C.; Shui, Wenqing#; .High-throughput identification of G protein-coupled receptor modulators through affinity mass spectrometry screening.CHEMICAL SCIENCE. 2018. 9(12):3192-3199.
- 18. Yang, Shifan*; Wu, Yiran; Xu, Ting-Hai; de Waal, Parker W.; He, Yuanzheng; Pu, Mengchen; Chen, Yuxiang; DeBruine, Zachary J.; Zhang, Bingjie; Zaidi, Saheem A.; Popov, Petr; Guo, Yu; Han, Gye Won; Lu, Yang; Suino-Powell, Kelly; Dong, Shaowei; Harikumar, Kaleeckal G.; Miller, Laurence J.; Katritch, Vsevolod; Xu, H. Eric; Shui, Wenqing; Stevens, Raymond C.; Melcher, Karsten; Zhao, Suwen; Xu, Fei#; .Crystal structure of the Frizzled 4 receptor in a ligand-free state.NATURE. 2018. 560(7720):666-670.
- 19. Li, Zhucui*; Li, Yujing; Chen, Wujiu; Cao, Qichen; Guo, Yufeng; Wan, Ni; Jiang, Xiaolong; Tang, Yinjie J.; Wang, Qinhong; Shui, Wenqing#; .Integrating MS1 and MS2 scans in high-resolution parallel reaction monitoring assays for targeted metabolite quantification and dynamic C-13-labeling metabolism analysis.ANALYTICAL CHEMISTRY. 2017. 89(1):877-885.
- 20. Wang, Xinbo*; Li, Shanshan; Wang, Haicheng; Shui, Wenqing#; Hu, Junjie#; .Quantitative proteomics reveal proteins enriched in tubular endoplasmic reticulum of Saccharomyces cerevisiae.ELIFE. 2017. 6:e23816.
- 21. Xiong, Yun*; Guo, Yufeng; Xiao, Weidi; Cao, Qichen; Li, Shanshan; Qi, Xianni; Zhang, Zhidan; Wang, Qinhong#; Shui, Wenqing#; .An NGS-independent strategy for proteome-wide identification of single amino acid polymorphisms by mass spectrometry.ANALYTICAL CHEMISTRY. 2016. 88(5):2784-2791.
- 22. Hua, Tian*; Vemuri, Kiran; Pu, Mengchen; Qu, Lu; Han, Gye Won; Wu, Yiran; Zhao, Suwen; Shui, Wenqing; Li, Shanshan; Korde, Anisha; Laprairie, Robert B.; Stahl, Edward L.; Ho, Jo-Hao; Zvonok, Nikolai; Zhou, Han; Kufareva, Irina; Wu, Beili; Zhao, Qiang; Hanson, Michael A.; Bohn, Laura M.; Makriyannis, Alexandros; Stevens, Raymond C.; Liu, Zhi-Jie#; .Crystal Structure of the Human Cannabinoid Receptor CB1.CELL. 2016. 167(3):750-762.
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